[WIP] Implement growth assessment using WHO indicators #80

Draft

joao.dubas wants to merge 76 commits from jpd-feat-add-bmi-module-with-live-view into main

pull from: jpd-feat-add-bmi-module-with-live-view

merge into: joao.dubas:main

joao.dubas:main

joao.dubas:jpd-use-testcontainer

Conversation 1 Commits 76 Files Changed 38 +32836 -4

76 Commits

Author	SHA1	Message	Date
Joao P Dubas	0bf11bb809	feat(deps): upgrade transitive dependencies ... * `earmark_parser` from 1.4.43 to 1.4.44 * `makeup` from 1.1.2 to 1.2.1 * `makeup_elixir` from 0.16.2 to 1.0.1 * `makeup_erlang` from 1.0.1 to 1.0.2 * `plug` from 1.16.1 to 1.17.0 * `saxy` from 1.5.0 to 1.6.0	2025-03-14 17:47:57 +00:00
Joao P Dubas	706f065dc8	feat(deps): upgrade dependencies ... * `ex_doc` from 0.36.1 to 0.37.3 * `xlsx_reader` from 0.8.7 to 0.8.8	2025-03-14 17:45:52 +00:00
Joao P Dubas	8d07a04b95	merge: updates from upstream ... Conflicts: mix.lock	2025-03-14 17:38:28 +00:00
Joao P Dubas	81ea8bc06b	merge: updates from upstream	2025-02-14 22:07:52 +00:00
Joao P Dubas	18759bf234	feat(deps): upgrade dependencies ... * `decimal`: from 2.1.1 to 2.3.0 * `earmark_parser`: from 1.4.41 to 1.4.43 * `ex_doc`: from 0.34.2 to 0.36.1 * `req`: from 0.5.7 to 0.5.8 https://diff.hex.pm/diffs?diffs[]=decimal:2.1.1:2.3.0&diffs[]=earmark_parser:1.4.41:1.4.43&diffs[]=ex_doc:0.34.2:0.36.1&diffs[]=req:0.5.7:0.5.8&	2025-01-26 15:10:24 +00:00
Joao P Dubas	d385451a5e	merge: updates from upstream ... Conflicts: mix.exs mix.lock	2025-01-26 15:07:39 +00:00
Joao P Dubas	97b1ef9a6b	merge: updates from upstream	2024-12-07 15:50:18 +00:00
Joao P Dubas	4b643202c3	feat: update deps ... * `req` from 0.5.6 to 0.5.7	2024-11-02 14:24:09 +00:00
Joao P Dubas	adfb85533b	merge: updates from upstream ... Conflicts: mix.lock	2024-11-02 14:22:34 +00:00
Joao P Dubas	f5d001d419	merge: updates from upstream	2024-11-02 13:30:15 +00:00
Joao P Dubas	aef062dcf5	fix(growth): remove unused match	2024-11-02 12:56:38 +00:00
Joao P Dubas	02540e1046	merge: updates from upstream ... Conflicts: mix.exs mix.lock	2024-10-30 19:56:46 +00:00
Joao P Dubas	69cd36d7e1	merge: updates from upstream	2024-10-21 02:16:01 +00:00
Joao P Dubas	f6cfff14e7	merge: update from upstream	2024-10-21 02:14:48 +00:00
Joao P Dubas	ffa2a68b7a	fix(growth): use Application.app_dir to write/read priv dir	2024-10-21 01:53:14 +00:00
Joao P Dubas	fb38910137	test(growth): add test for happy download paths	2024-10-07 19:27:27 +00:00
Joao P Dubas	6ba171343d	test(growth): add dep to write in-memory excel data ... This will be used to mock data from WHO site.	2024-10-07 19:23:26 +00:00
Joao P Dubas	0fc8c56c41	chore(growth): add separated method to merge genders data ... This makes easier to test aggregation logic for multiple gender configuration.	2024-10-07 19:22:14 +00:00
Joao P Dubas	c77d4eb97d	chore(growth): allow one to customize Req options ... With this change it's possible to change the way the application make requests to WHO website.	2024-10-07 19:21:27 +00:00
Joao P Dubas	df16f2ce1c	merge: updates from upstream	2024-10-07 12:17:42 +00:00
Joao P Dubas	25cb7508bb	test(growth): add main module tests	2024-10-05 15:11:33 +00:00
Joao P Dubas	84cf6758bb	fix(growth): results is now a keyword list	2024-10-05 15:10:40 +00:00
Joao P Dubas	7e041ae6c9	chore(growth): adjust indicator lookup to use atoms for unit	2024-10-05 15:09:44 +00:00
Joao P Dubas	82d7009b34	chore(growth): adjust key in ets tables to contain atoms ... The `ets` tables containing growth indicator has a key in the form of `{gender :: atom(), unit :: atom(), value :: number()}`.	2024-10-05 15:07:10 +00:00
Joao P Dubas	fa65a36852	test(growth): fix doctest for centile and percentile	2024-10-05 12:58:36 +00:00
Joao P Dubas	1e36c29180	test(growth): add percentile test	2024-10-05 12:58:04 +00:00
Joao P Dubas	8c89b55487	test(growth): add centile compute test	2024-10-05 12:57:20 +00:00
Joao P Dubas	a427e11958	test(growth): add zscore compute test	2024-10-05 12:56:28 +00:00
Joao P Dubas	c9e3bf68ae	test(growth): add bmi test	2024-10-05 12:55:44 +00:00
Joao P Dubas	7670dce630	test(growth): add sample data to be used in tests	2024-10-05 12:53:56 +00:00
Joao P Dubas	f3846cad24	chore(growth): update doc to reflect percentile values ... This fixes an issue were the returned value represented the measurment at a given z-score (the centile value).	2024-10-03 22:16:15 +00:00
Joao P Dubas	27a7a05584	fix(growth): improve doc for centile calculation ... This module converts a given z-score and Box-Cox values into the related measurement.	2024-10-03 22:14:56 +00:00
Joao P Dubas	fc0d9db7a5	merge: updates from upstream ... Conflicts: mix.exs mix.lock	2024-10-02 12:31:04 +00:00
Joao P Dubas	d9dcfa3846	merge: updates from upstream	2024-10-02 10:40:04 +00:00
Joao P Dubas	3a69b8d4ff	merge: updates from upstream	2024-10-01 14:29:26 +00:00
Joao P Dubas	7c15e1fae6	chore: execute dialyzer with short format	2024-09-26 00:32:44 +00:00
Joao P Dubas	8328bbe9fb	merge: updates from tracking	2024-09-25 23:48:32 +00:00
Joao P Dubas	90613635fb	merge: updates from upstream ... Conflicts: .gitignore lib/wabanex/application.ex mix.lock	2024-09-22 19:06:02 +00:00
Joao P Dubas	dc6e00d54b	chore: ignore elixir tools folder	2024-09-18 11:49:23 +00:00
Joao P Dubas	5c044e69d9	fix(growth): use centile and percentile correctly ... 1. The calculation made in `Grownth.Calc.Centile.compute/4` converts a given z-score into the expected measurement value. This can be used to get specific values for key z-scores, such as, -3, -2, 2 and 3. 2. To calculate the percentile of a given z-score the system uses the cumulative distribution function.	2024-08-28 13:03:45 +00:00
Joao P Dubas	824a70452f	merge: updates from upstream	2024-08-13 14:17:32 +00:00
Joao P Dubas	b696cc129d	merge: updates from upstream ... Conflicts: mix.exs mix.lock	2024-08-12 20:19:36 +00:00
Joao P Dubas	c923b2efb7	test(growth): work on age calculation	2024-07-12 11:18:40 +00:00
Joao P Dubas	8e9907a3e8	merge: updates from upstream	2024-07-12 11:15:30 +00:00
Joao P Dubas	3914bd5240	merge: updates from upstream	2024-07-08 21:55:02 +00:00
Joao P Dubas	8dffb86d01	chore(deps): update deps of deps	2024-07-08 21:36:37 +00:00
Joao P Dubas	866730238e	feat(deps): upgrade req from 0.5.0 to 0.5.2	2024-07-08 21:28:35 +00:00
Joao P Dubas	eeb6964348	merge: updates from upstream ... Conflicts: mix.lock	2024-07-08 21:25:21 +00:00
Joao P Dubas	0d7a4cc9c3	chore(growth): move nil logic to scorer behaviour ... Handle `nil` measurement in `Growth.Score.Scorer`.	2024-06-11 14:53:19 +00:00
Joao P Dubas	7fab746ea8	feat: add ex_doc to generate documentation	2024-06-11 12:18:18 +00:00
Joao P Dubas	c81e4fda67	chore(growth): add log in loader	2024-06-11 12:02:14 +00:00
Joao P Dubas	bc9c2124f1	chore(growth): add example for Growth.new/4	2024-06-11 12:01:50 +00:00
Joao P Dubas	c14a26a184	fix(growth): measure for subscapular skinfold	2024-06-11 12:01:25 +00:00
Joao P Dubas	79aec9f7e5	feat(growth): calculate z-score/centile for all indicators	2024-06-11 11:42:57 +00:00
Joao P Dubas	2545a796c3	chore(growth): return nil when measure isn't set	2024-06-11 11:42:17 +00:00
Joao P Dubas	88b8e811a8	chore(growth): apply scorer behaviour in indicators	2024-06-11 11:41:31 +00:00
Joao P Dubas	fa022b9592	feat(growth): calculate z-score/centile for all indicators ... The `Growth.Score.Scorer` behaviour implements the methods needed to calculate z-score and centile for any indicator.	2024-06-11 11:38:18 +00:00
Joao P Dubas	0ac434c61d	fix(growth): ignore enum result explicitly	2024-06-10 19:24:41 +00:00
Joao P Dubas	06b35cbceb	wip(growth): implement results for bmi ... This implementation should be made generic for all other scores.	2024-06-10 19:09:35 +00:00
Joao P Dubas	28f0546bcb	chore(growth): add default value for results	2024-06-10 18:35:12 +00:00
Joao P Dubas	c175c3edfd	fix(growth): typespec and doc for centile calc	2024-06-10 18:34:24 +00:00
Joao P Dubas	4234b2e917	chore(growth): load is independent from task ... Ensure that `Growth.Indicators.Load.all/0` can be run independently from the task. So, the `ets` table is create based on the filename processed.	2024-06-10 13:01:44 +00:00
Joao P Dubas	04fff60541	wip(growth): add score module ... This module is responsible for calculate the z score/centile for each measurement.	2024-06-10 12:15:16 +00:00
Joao P Dubas	b415b38184	feat(growth): load data on application start ... To make this possible, the following changes were made: * Use `Task` to start the load process * Create `ets` table before start the async task * This is needed to keep the tables alive after the task process exits * Adjust the application to start the `Growth.Indicators.Load` task	2024-06-10 12:11:18 +00:00
Joao P Dubas	412250d7ef	feat(growth): add struct to represent measurement	2024-06-09 20:00:49 +00:00
Joao P Dubas	d3c1aa9b6b	chore(growth): improve age documentation and typing	2024-06-09 19:59:33 +00:00
Joao P Dubas	025ab1537d	chore(growth): name ets tables with score modules	2024-06-09 19:58:34 +00:00
Joao P Dubas	52c1d0c028	feat(growth): load csv indicators into ets tables	2024-06-07 13:28:13 +00:00
Joao P Dubas	902a22c947	chore(growth): fetch extended data for indicators ... Also, improve module doc.	2024-06-06 22:49:52 +00:00
Joao P Dubas	a8466f0c1d	chore(growth): add documentation and examples	2024-06-06 20:39:10 +00:00
Joao P Dubas	bb79aa2f3a	fix(growth): alias z-score and use if	2024-06-06 11:34:02 +00:00
Joao P Dubas	500d0e89bb	wip(growth): calculate key metrics for growth ... 1. calculate age in days, weeks, and months 2. calculate body mass index for metric and english unities 3. calculate z-score for a given measurement and box-cox parameters (l, m, s) 4. calculate centile score for a given measurement and box-cox parameters	2024-06-06 01:36:11 +00:00
Joao P Dubas	8be9fa38bb	wip(growth): add fix note on convert/3 method	2024-06-04 23:56:27 +00:00
Joao P Dubas	9c8e1d20ee	wip(growth): improve data parsing ... 1. Fetch common data for all indicators 2. Remove headers during merge Also, re-generate files.	2024-06-04 23:55:03 +00:00
Joao P Dubas	2fedb4ecf0	wip(growth): change from with to case	2024-06-04 14:36:20 +00:00
Joao P Dubas	58f14c0346	wip(growth): fetch|extract|save indicators from WHO ... Initial implementation to fetch growth indicators from WHO. For now, the system merges the measurements for each gender and age group in a single `csv` file. The final solution should do this, saving a `dets` file.	2024-06-04 13:57:32 +00:00