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[WIP] Implement growth assessment using WHO indicators #80

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joao.dubas wants to merge 73 commits from jpd-feat-add-bmi-module-with-live-view into main
pull from: jpd-feat-add-bmi-module-with-live-view
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joao.dubas commented 2024-06-04 16:48:29 +00:00
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Add growth curve calculation based on z-score and centile from z-score.

Add growth curve calculation based on z-score and centile from z-score.
joao.dubas added 2 commits 2024-06-04 16:48:30 +00:00 
Initial implementation to fetch growth indicators from WHO.

For now, the system merges the measurements for each gender and age
group in a single `csv` file.

The final solution should do this, saving a `dets` file.
wip(growth): change from with to case
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joao.dubas added 2 commits 2024-06-04 23:57:05 +00:00 
1. Fetch common data for all indicators
2. Remove headers during merge

Also, re-generate files.
wip(growth): add fix note on convert/3 method
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joao.dubas added 1 commit 2024-06-06 01:36:35 +00:00
wip(growth): calculate key metrics for growth
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1. calculate age in days, weeks, and months
2. calculate body mass index for metric and english unities
3. calculate z-score for a given measurement and box-cox parameters (l,
   m, s)
4. calculate centile score for a given measurement and box-cox
   parameters
joao.dubas added 1 commit 2024-06-06 11:35:21 +00:00
fix(growth): alias z-score and use if
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joao.dubas added 1 commit 2024-06-06 20:39:51 +00:00
chore(growth): add documentation and examples
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joao.dubas added 1 commit 2024-06-06 22:57:09 +00:00
chore(growth): fetch extended data for indicators
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902a22c947 
Also, improve module doc.
joao.dubas added 1 commit 2024-06-07 13:29:10 +00:00
feat(growth): load csv indicators into ets tables
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joao.dubas added 3 commits 2024-06-09 20:01:18 +00:00
feat(growth): add struct to represent measurement
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joao.dubas added 2 commits 2024-06-10 12:16:05 +00:00 
To make this possible, the following changes were made:

* Use `Task` to start the load process
* Create `ets` table before start the async task
  * This is needed to keep the tables alive after the task process exits
* Adjust the application to start the `Growth.Indicators.Load` task
wip(growth): add score module
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This module is responsible for calculate the z score/centile for each
measurement.
joao.dubas added 1 commit 2024-06-10 17:56:34 +00:00
chore(growth): load is independent from task
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Ensure that `Growth.Indicators.Load.all/0` can be run independently from
the task.

So, the `ets` table is create based on the filename processed.
joao.dubas added 3 commits 2024-06-10 19:11:32 +00:00
wip(growth): implement results for bmi
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This implementation should be made generic for all other scores.
joao.dubas added 1 commit 2024-06-10 19:25:02 +00:00
fix(growth): ignore enum result explicitly
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joao.dubas added 4 commits 2024-06-11 11:43:31 +00:00 
The `Growth.Score.Scorer` behaviour implements the methods needed to
calculate z-score and centile for any indicator.
feat(growth): calculate z-score/centile for all indicators
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joao.dubas added 3 commits 2024-06-11 12:02:34 +00:00
chore(growth): add log in loader
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joao.dubas added 1 commit 2024-06-11 12:18:50 +00:00
feat: add ex_doc to generate documentation
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joao.dubas added 1 commit 2024-06-11 14:54:24 +00:00
chore(growth): move nil logic to scorer behaviour
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Handle `nil` measurement in `Growth.Score.Scorer`.
joao.dubas added 3 commits 2024-07-08 21:36:57 +00:00 
Conflicts:
    mix.lock
chore(deps): update deps of deps
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joao.dubas added 1 commit 2024-07-08 21:55:29 +00:00
merge: updates from upstream
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joao.dubas added 1 commit 2024-07-12 11:15:50 +00:00
merge: updates from upstream
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joao.dubas added 1 commit 2024-07-12 11:19:59 +00:00
test(growth): work on age calculation
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joao.dubas added 1 commit 2024-08-12 20:24:53 +00:00
merge: updates from upstream
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Conflicts:
    mix.exs
    mix.lock
joao.dubas added 1 commit 2024-08-13 14:17:51 +00:00
merge: updates from upstream
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joao.dubas added 1 commit 2024-09-18 11:49:48 +00:00
chore: ignore elixir tools folder
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joao.dubas added 1 commit 2024-09-22 19:07:15 +00:00
merge: updates from upstream
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Conflicts:
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    lib/wabanex/application.ex
    mix.lock
joao.dubas added 2 commits 2024-09-25 23:51:07 +00:00 
1. The calculation made in `Grownth.Calc.Centile.compute/4` converts a
   given z-score into the expected measurement value.
   This can be used to get specific values for key z-scores, such as,
   -3, -2, 2 and 3.
2. To calculate the percentile of a given z-score the system uses the
   cumulative distribution function.
merge: updates from tracking
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joao.dubas added 1 commit 2024-09-26 00:33:23 +00:00
chore: execute dialyzer with short format
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joao.dubas added 1 commit 2024-10-01 14:29:59 +00:00
merge: updates from upstream
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joao.dubas added 1 commit 2024-10-02 10:40:31 +00:00
merge: updates from upstream
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joao.dubas added 1 commit 2024-10-02 12:31:59 +00:00
merge: updates from upstream
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Conflicts:
  mix.exs
  mix.lock
joao.dubas added 2 commits 2024-10-03 22:17:46 +00:00 
This module converts a given z-score and Box-Cox values into the related
measurement.
chore(growth): update doc to reflect percentile values
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This fixes an issue were the returned value represented the measurment
at a given z-score (the centile value).
joao.dubas added 6 commits 2024-10-05 12:59:43 +00:00
test(growth): fix doctest for centile and percentile
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joao.dubas reviewed 2024-10-05 13:03:23 +00:00
test/growth/calc/centile_test.exs
@ -0,0 +10,4 @@
alias Growth.Calc.Centile
describe "compute/4" do
for %{key: key} = params <- sample() do
joao.dubas commented 2024-10-05 13:03:23 +00:00
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The table-driven test is based on: https://blog.jpalardy.com/posts/a-table-driven-test-template-for-elixir/

The table-driven test is based on: https://blog.jpalardy.com/posts/a-table-driven-test-template-for-elixir/
joao.dubas added 4 commits 2024-10-05 15:12:00 +00:00 
The `ets` tables containing growth indicator has a key in the form of
`{gender :: atom(), unit :: atom(), value :: number()}`.
test(growth): add main module tests
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joao.dubas added 1 commit 2024-10-07 12:18:06 +00:00
merge: updates from upstream
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joao.dubas added 4 commits 2024-10-07 19:29:52 +00:00 
With this change it's possible to change the way the application make
requests to WHO website.
This makes easier to test aggregation logic for multiple gender
configuration.
This will be used to mock data from WHO site.
test(growth): add test for happy download paths
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joao.dubas added 1 commit 2024-10-21 01:55:37 +00:00
fix(growth): use Application.app_dir to write/read priv dir
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joao.dubas added 1 commit 2024-10-21 02:15:47 +00:00
merge: update from upstream
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joao.dubas added 1 commit 2024-10-21 02:16:32 +00:00
merge: updates from upstream
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joao.dubas added 1 commit 2024-10-30 19:57:20 +00:00
merge: updates from upstream
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Conflicts:
  mix.exs
  mix.lock
joao.dubas added 1 commit 2024-11-02 12:57:11 +00:00
fix(growth): remove unused match
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joao.dubas added 3 commits 2024-11-02 14:27:09 +00:00 
Conflicts:
    mix.lock
feat: update deps
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* `req` from 0.5.6 to 0.5.7
joao.dubas added 1 commit 2024-12-07 15:57:35 +00:00
merge: updates from upstream
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joao.dubas added 2 commits 2025-01-28 00:27:03 +00:00 
Conflicts:
    mix.exs
    mix.lock
feat(deps): upgrade dependencies
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* `decimal`: from 2.1.1 to 2.3.0
* `earmark_parser`: from 1.4.41 to 1.4.43
* `ex_doc`: from 0.34.2 to 0.36.1
* `req`: from 0.5.7 to 0.5.8

https://diff.hex.pm/diffs?diffs[]=decimal:2.1.1:2.3.0&diffs[]=earmark_parser:1.4.41:1.4.43&diffs[]=ex_doc:0.34.2:0.36.1&diffs[]=req:0.5.7:0.5.8&
joao.dubas added 1 commit 2025-02-14 22:09:38 +00:00
merge: updates from upstream
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  • mix.lock
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Reference: joao.dubas/ex_trainer#80
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