137 Commits

This Branch

This Branch

All Branches

Author	SHA1	Message	Date
Joao P Dubas	5c044e69d9	fix(growth): use centile and percentile correctly ... 1. The calculation made in `Grownth.Calc.Centile.compute/4` converts a given z-score into the expected measurement value. This can be used to get specific values for key z-scores, such as, -3, -2, 2 and 3. 2. To calculate the percentile of a given z-score the system uses the cumulative distribution function.	2024-08-28 13:03:45 +00:00
Joao P Dubas	824a70452f	merge: updates from upstream	2024-08-13 14:17:32 +00:00
renovate-bot	4d545074f5	chore(deps): update postgres docker tag to v16.4 (#90) ... This PR contains the following updates: | Package | Update | Change | |---|---|---| | postgres | minor | `16.3-alpine` -> `16.4-alpine` | --- This PR has been generated by [Renovate Bot](https://github.com/renovatebot/renovate). <!--renovate-debug:eyJjcmVhdGVkSW5WZXIiOiIzNy40MjEuMiIsInVwZGF0ZWRJblZlciI6IjM3LjQyMS4yIiwidGFyZ2V0QnJhbmNoIjoibWFpbiIsImxhYmVscyI6W119--> Co-authored-by: Joao P Dubas <joao.dubas+gitea@gmail.com> Reviewed-on: #90 Co-authored-by: renovate-bot <renovate-bot@dubas.dev> Co-committed-by: renovate-bot <renovate-bot@dubas.dev>	2024-08-13 14:09:16 +00:00
Joao P Dubas	b696cc129d	merge: updates from upstream ... Conflicts: mix.exs mix.lock	2024-08-12 20:19:36 +00:00
Joao P Dubas	4195fc615f	feat: upgrade application dependencies (#93) ... [Upgrade deps][0]: * `absinthe` from 1.7.7 to 1.7.8 * `ecto` from 3.11.2 to 3.12.0 * `ecto_sql` from 3.11.3 to 3.12.0 * `gettext` from 0.24.0 to 0.25.0 * `jason` from 1.4.3 to 1.4.4 * `mix_audit` from 2.1.3 to 2.1.4 * `postgrex` from 0.18.0 to 0.19.0 * `prom_ex` from 1.9.0 to 1.10.0 * `telemetry_metrics` from 0.6.2 to 1.0.0 Install transient deps: * `peep` to 3.2.0 Reviewed-on: #93 [0]: https://diff.hex.pm/diffs?diffs[]=absinthe:1.7.7:1.7.8&diffs[]=ecto:3.11.2:3.12.0&diffs[]=ecto_sql:3.11.3:3.12.0&diffs[]=gettext:0.24.0:0.25.0&diffs[]=jason:1.4.3:1.4.4&diffs[]=mix_audit:2.1.3:2.1.4&diffs[]=postgrex:0.18.0:0.19.0&diffs[]=prom_ex:1.9.0:1.10.0&diffs[]=telemetry_metrics:0.6.2:1.0.0 Co-authored-by: Joao P Dubas <joao.dubas+gitea@gmail.com> Co-committed-by: Joao P Dubas <joao.dubas+gitea@gmail.com>	2024-08-12 20:08:18 +00:00
Joao P Dubas	c923b2efb7	test(growth): work on age calculation	2024-07-12 11:18:40 +00:00
Joao P Dubas	8e9907a3e8	merge: updates from upstream	2024-07-12 11:15:30 +00:00
Joao P Dubas	39fd238ed8	feat: upgrade erlang and deps (#87) ... * Upgrade erlang to 27.0.1 * Upgrade abisnthe to 1.7.7 Reviewed-on: #87 Co-authored-by: Joao P Dubas <joao.dubas+gitea@gmail.com> Co-committed-by: Joao P Dubas <joao.dubas+gitea@gmail.com>	2024-07-12 11:12:50 +00:00
Joao P Dubas	3914bd5240	merge: updates from upstream	2024-07-08 21:55:02 +00:00
Joao P Dubas	2fa1a773f2	feat(ci): improve dependency graph (#84) ... Reviewed-on: #84 Co-authored-by: Joao P Dubas <joao.dubas+gitea@gmail.com> Co-committed-by: Joao P Dubas <joao.dubas+gitea@gmail.com>	2024-07-08 21:54:20 +00:00
Joao P Dubas	8dffb86d01	chore(deps): update deps of deps	2024-07-08 21:36:37 +00:00
Joao P Dubas	866730238e	feat(deps): upgrade req from 0.5.0 to 0.5.2	2024-07-08 21:28:35 +00:00
Joao P Dubas	eeb6964348	merge: updates from upstream ... Conflicts: mix.lock	2024-07-08 21:25:21 +00:00
Joao P Dubas	3f83808335	feat: upgrade elixir and erlang runtimes, and deps (#83) ... Upgrade runtimes: * [erlang from 26.2.5 to 27.0][0] * [elixir from 1.16.3 to 1.17.1][1] Upgrade dependencies: * `castore` [from 1.0.6 to 1.0.8](https://diff.hex.pm/diff/castore/1.0.6..1.0.8) * `cowboy` [from 2.10.0 to 2.12.0](https://diff.hex.pm/diff/cowboy/2.10.0..2.12.0) * `cowlib` [from 2.12.1 to 2.13.0](https://diff.hex.pm/diff/cowlib/2.12.1..2.13.0) * `credo` [from 1.7.6 to 1.7.7](https://diff.hex.pm/diff/credo/1.7.6..1.7.7) * `db_connection` [from 2.6.0 to 2.7.0](https://diff.hex.pm/diff/db_connection/2.6.0..2.7.0) * `ecto_sql` [from 3.11.2 to 3.11.3](https://diff.hex.pm/diff/ecto_sql/3.11.2..3.11.3) * `erlex` [from 0.2.6 to 0.2.7](https://diff.hex.pm/diff/erlex/0.2.6..0.2.7) * `hpax` [from 0.1.2 to 1.0.0](https://diff.hex.pm/diff/hpax/0.1.2..1.0.0) * `jason` [from 1.4.1 to 1.4.3](https://diff.hex.pm/diff/jason/1.4.1..1.4.3) * `mime` [from 2.0.5 to 2.0.6](https://diff.hex.pm/diff/mime/2.0.5..2.0.6) * `mint` [from 1.5.2 to 1.6.2](https://diff.hex.pm/diff/mint/1.5.2..1.6.2) * `nimble_options` [from 1.1.0 to 1.1.1](https://diff.hex.pm/diff/nimble_options/1.1.0..1.1.1) * `nimble_pool` [from 1.0.0 to 1.1.0](https://diff.hex.pm/diff/nimble_pool/1.0.0..1.1.0) * `phoenix` [from 1.7.12 to 1.7.14](https://diff.hex.pm/diff/phoenix/1.7.12..1.7.14) * `phoenix_ecto` [from 4.6.1 to 4.6.2](https://diff.hex.pm/diff/phoenix_ecto/4.6.1..4.6.2) * `phoenix_live_dashboard` [from 0.8.3 to 0.8.4](https://diff.hex.pm/diff/phoenix_live_dashboard/0.8.3..0.8.4) * `phoenix_live_view` [from 0.20.14 to 0.20.17](https://diff.hex.pm/diff/phoenix_live_view/0.20.14..0.20.17) * `phoenix_view` [from 2.0.3 to 2.0.4](https://diff.hex.pm/diff/phoenix_view/2.0.3..2.0.4) * `plug` [from 1.15.3 to 1.16.1](https://diff.hex.pm/diff/plug/1.15.3..1.16.1) * `plug_crypto` [from 2.0.0 to 2.1.0](https://diff.hex.pm/diff/plug_crypto/2.0.0..2.1.0) * `telemetry_metrics_prometheus_core` [from 1.2.0 to 1.2.1](https://diff.hex.pm/diff/telemetry_metrics_prometheus_core/1.2.0..1.2.1) * `websock_adapter` [from 0.5.5 to 0.5.6](https://diff.hex.pm/diff/websock_adapter/0.5.5..0.5.6) * `yaml_elixir` [from 2.9.0 to 2.11.0](https://diff.hex.pm/diff/yaml_elixir/2.9.0..2.11.0) To make `graphql` work with the newer `erlang` and `elixir`, the `absinthe` is installed directly from github: * [`absinthe`](358e273a26) * [`absinthe_plug`](3a984cc341) Finally, the `ci` routine was simplified, so test + lint is executed in parallel, and more core is reused. [0]: https://www.erlang.org/news/170 [1]: https://github.com/elixir-lang/elixir/releases/tag/v1.17.1 Reviewed-on: #83 Co-authored-by: Joao P Dubas <joao.dubas+gitea@gmail.com> Co-committed-by: Joao P Dubas <joao.dubas+gitea@gmail.com>	2024-07-08 21:04:26 +00:00
Joao P Dubas	0d7a4cc9c3	chore(growth): move nil logic to scorer behaviour ... Handle `nil` measurement in `Growth.Score.Scorer`.	2024-06-11 14:53:19 +00:00
Joao P Dubas	7fab746ea8	feat: add ex_doc to generate documentation	2024-06-11 12:18:18 +00:00
Joao P Dubas	c81e4fda67	chore(growth): add log in loader	2024-06-11 12:02:14 +00:00
Joao P Dubas	bc9c2124f1	chore(growth): add example for Growth.new/4	2024-06-11 12:01:50 +00:00
Joao P Dubas	c14a26a184	fix(growth): measure for subscapular skinfold	2024-06-11 12:01:25 +00:00
Joao P Dubas	79aec9f7e5	feat(growth): calculate z-score/centile for all indicators	2024-06-11 11:42:57 +00:00
Joao P Dubas	2545a796c3	chore(growth): return nil when measure isn't set	2024-06-11 11:42:17 +00:00
Joao P Dubas	88b8e811a8	chore(growth): apply scorer behaviour in indicators	2024-06-11 11:41:31 +00:00
Joao P Dubas	fa022b9592	feat(growth): calculate z-score/centile for all indicators ... The `Growth.Score.Scorer` behaviour implements the methods needed to calculate z-score and centile for any indicator.	2024-06-11 11:38:18 +00:00
Joao P Dubas	0ac434c61d	fix(growth): ignore enum result explicitly	2024-06-10 19:24:41 +00:00
Joao P Dubas	06b35cbceb	wip(growth): implement results for bmi ... This implementation should be made generic for all other scores.	2024-06-10 19:09:35 +00:00
Joao P Dubas	28f0546bcb	chore(growth): add default value for results	2024-06-10 18:35:12 +00:00
Joao P Dubas	c175c3edfd	fix(growth): typespec and doc for centile calc	2024-06-10 18:34:24 +00:00
Joao P Dubas	4234b2e917	chore(growth): load is independent from task ... Ensure that `Growth.Indicators.Load.all/0` can be run independently from the task. So, the `ets` table is create based on the filename processed.	2024-06-10 13:01:44 +00:00
Joao P Dubas	04fff60541	wip(growth): add score module ... This module is responsible for calculate the z score/centile for each measurement.	2024-06-10 12:15:16 +00:00
Joao P Dubas	b415b38184	feat(growth): load data on application start ... To make this possible, the following changes were made: * Use `Task` to start the load process * Create `ets` table before start the async task * This is needed to keep the tables alive after the task process exits * Adjust the application to start the `Growth.Indicators.Load` task	2024-06-10 12:11:18 +00:00
Joao P Dubas	412250d7ef	feat(growth): add struct to represent measurement	2024-06-09 20:00:49 +00:00
Joao P Dubas	d3c1aa9b6b	chore(growth): improve age documentation and typing	2024-06-09 19:59:33 +00:00
Joao P Dubas	025ab1537d	chore(growth): name ets tables with score modules	2024-06-09 19:58:34 +00:00
Joao P Dubas	52c1d0c028	feat(growth): load csv indicators into ets tables	2024-06-07 13:28:13 +00:00
Joao P Dubas	902a22c947	chore(growth): fetch extended data for indicators ... Also, improve module doc.	2024-06-06 22:49:52 +00:00
Joao P Dubas	a8466f0c1d	chore(growth): add documentation and examples	2024-06-06 20:39:10 +00:00
Joao P Dubas	bb79aa2f3a	fix(growth): alias z-score and use if	2024-06-06 11:34:02 +00:00
Joao P Dubas	500d0e89bb	wip(growth): calculate key metrics for growth ... 1. calculate age in days, weeks, and months 2. calculate body mass index for metric and english unities 3. calculate z-score for a given measurement and box-cox parameters (l, m, s) 4. calculate centile score for a given measurement and box-cox parameters	2024-06-06 01:36:11 +00:00
Joao P Dubas	8be9fa38bb	wip(growth): add fix note on convert/3 method	2024-06-04 23:56:27 +00:00
Joao P Dubas	9c8e1d20ee	wip(growth): improve data parsing ... 1. Fetch common data for all indicators 2. Remove headers during merge Also, re-generate files.	2024-06-04 23:55:03 +00:00
Joao P Dubas	2fedb4ecf0	wip(growth): change from with to case	2024-06-04 14:36:20 +00:00
Joao P Dubas	58f14c0346	wip(growth): fetch|extract|save indicators from WHO ... Initial implementation to fetch growth indicators from WHO. For now, the system merges the measurements for each gender and age group in a single `csv` file. The final solution should do this, saving a `dets` file.	2024-06-04 13:57:32 +00:00
Joao P Dubas	ece17e3cf9	feat: upgrade elixir runtimes and dependencies (#78) ... Upgrade [elixir][0] runtime from [1.16.2 to 1.16.3][1]. Also, [upgrade application dependencies][2]: * `ecto_sql` from 3.11.1 to 3.11.2 * `phoenix_ecto` from 4.6.0 to 4.6.1 * `postgrex` from 0.17.5 to 0.18.0 Reviewed-on: #78 [0]: https://github.com/elixir-lang/elixir/releases/tag/v1.16.3 [1]: https://github.com/elixir-lang/elixir/compare/v1.16.2...v1.16.3 [2]: https://diff.hex.pm/diffs?diffs[]=ecto_sql:3.11.1:3.11.2&diffs[]=phoenix_ecto:4.6.0:4.6.1&diffs[]=postgrex:0.17.5:0.18.0 Co-authored-by: Joao P Dubas <joao.dubas+gitea@gmail.com> Co-committed-by: Joao P Dubas <joao.dubas+gitea@gmail.com>	2024-05-28 14:27:49 +00:00
Joao P Dubas	e616d01e63	chore(ci): upgrade database and erlang runtime on pipelines (#74) ... The following upgrades were made: * Bump [`postgres` from 16.0 to 16.3][postgres-release]. * Bump [`erlang`][erlang-release] from [26.2.3 to 26.2.5][erlang-diffs]. Also, use the same `elixir` image/tag on both pipelines. [postgres-release]: https://www.postgresql.org/docs/release/16.3/ [erlang-release]: https://www.erlang.org/patches/otp-26.2.5 [erlang-diffs]: https://github.com/erlang/otp/compare/OTP-26.2.3...OTP-26.2.5 Reviewed-on: #74 Co-authored-by: Joao P Dubas <joao.dubas+gitea@gmail.com> Co-committed-by: Joao P Dubas <joao.dubas+gitea@gmail.com>	2024-05-16 19:15:12 +00:00
Joao P Dubas	9aeaaabc35	chore(deps): upgrade erlang runtime and application dependencies (#73) ... Bump [application dependencies][app-diffs]: * [`credo` from 1.7.5 to 1.7.6][credo-diffs] * [`phoenix_ecto` from 4.5.1. to 4.6.0][phoenix_ecto-diffs] Bump [`erlang`][erlang-release] from [26.2.3 to 26.2.5][erlang-diffs]. [app-diffs]: https://diff.hex.pm/diffs?diffs[]=credo:1.7.5:1.7.6&diffs[]=phoenix_ecto:4.5.1:4.6.0 [credo-diffs]: https://diff.hex.pm/diff/credo/1.7.5..1.7.6 [phoenix_ecto-diffs]: https://diff.hex.pm/diff/phoenix_ecto/4.5.1..4.6.0 [erlang-release]: https://www.erlang.org/patches/otp-26.2.5 [erlang-diffs]: https://github.com/erlang/otp/compare/OTP-26.2.3...OTP-26.2.5 Reviewed-on: #73 Co-authored-by: Joao P Dubas <joao.dubas+gitea@gmail.com> Co-committed-by: Joao P Dubas <joao.dubas+gitea@gmail.com>	2024-05-16 18:46:25 +00:00
renovate-bot	de9fa663c9	chore(deps): update postgres docker tag to v16.3 (#71) ... This PR contains the following updates: | Package | Update | Change | |---|---|---| | postgres | minor | `16.2-alpine` -> `16.3-alpine` | --- This PR has been generated by [Renovate Bot](https://github.com/renovatebot/renovate). <!--renovate-debug:eyJjcmVhdGVkSW5WZXIiOiIzNy4xNjIuMSIsInVwZGF0ZWRJblZlciI6IjM3LjE2Mi4xIiwidGFyZ2V0QnJhbmNoIjoibWFpbiJ9--> Reviewed-on: #71 Co-authored-by: renovate-bot <renovate-bot@dubas.dev> Co-committed-by: renovate-bot <renovate-bot@dubas.dev>	2024-05-10 13:53:46 +00:00
Joao P Dubas	037f4d7504	feat(deps): bump application dependencies (#70) ... [Bump dependencies][0]: 1. junit_formatter from 3.3.1 to 3.4.0 2. phoenix from 1.7.11 to 1.7.12 3. plug_cowboy from 2.7.0 to 2.7.1 4. telemetry_poller from 1.0.0 to 1.1.0 [0]: https://diff.hex.pm/diffs?diffs%5B%5D=junit_formatter:3.3.1:3.4.0&diffs%5B%5D=phoenix:1.7.11:1.7.12&diffs%5B%5D=plug_cowboy:2.7.0:2.7.1&diffs%5B%5D=telemetry_poller:1.0.0:1.1.0 Co-authored-by: renovate-bot <renovate-bot@dubas.dev> Reviewed-on: #70 Co-authored-by: Joao P Dubas <joao.dubas+gitea@gmail.com> Co-committed-by: Joao P Dubas <joao.dubas+gitea@gmail.com>	2024-04-15 14:18:49 +00:00
Joao P Dubas	9bd41ba3b8	chore(deps): bump erlang runtime and deps (#67) ... Update runtime: * Bump [`erlang` from 26.2.2 to 26.2.3][0] Update [dependencies][1]: * credo from 1.7.4 to 1.7.5 * mix_audit from 2.1.2 to 2.1.3 * phoenix_ecto from 4.4.3 to 4.5.1 * postgrex from 0.17.4 to 0.17.5 [0]: https://www.erlang.org/patches/otp-26.2.3 [1]: https://diff.hex.pm/diffs?diffs[]=credo:1.7.4:1.7.5&diffs[]=mix_audit:2.1.2:2.1.3&diffs[]=phoenix_ecto:4.4.5:4.5.1&diffs[]=postgrex:0.17.4:0.17.5 Reviewed-on: #67 Co-authored-by: Joao P Dubas <joao.dubas+gitea@gmail.com> Co-committed-by: Joao P Dubas <joao.dubas+gitea@gmail.com>	2024-03-19 16:23:27 +00:00
renovate-bot	dbce23e51a	chore(deps): update hexpm/elixir docker tag to v1.16.2 (#65) ... This PR contains the following updates: | Package | Type | Update | Change | |---|---|---|---| | hexpm/elixir | final | patch | `1.16.1-erlang-26.2.2-debian-bookworm-20240130-slim` -> `1.16.2-erlang-26.2.2-debian-bookworm-20240130-slim` | --- This PR has been generated by [Renovate Bot](https://github.com/renovatebot/renovate). <!--renovate-debug:eyJjcmVhdGVkSW5WZXIiOiIzNy4xNjIuMSIsInVwZGF0ZWRJblZlciI6IjM3LjE2Mi4xIiwidGFyZ2V0QnJhbmNoIjoibWFpbiJ9--> Reviewed-on: #65 Co-authored-by: renovate-bot <renovate-bot@dubas.dev> Co-committed-by: renovate-bot <renovate-bot@dubas.dev>	2024-03-19 12:48:38 +00:00
renovate-bot	2fca7bc67d	chore(deps): update dependency elixir to v1.16.2 (#64) ... This PR contains the following updates: | Package | Update | Change | |---|---|---| | [elixir](https://elixir-lang.org/) ([source](https://github.com/elixir-lang/elixir)) | patch | `1.16.1` -> `1.16.2` | --- This PR has been generated by [Renovate Bot](https://github.com/renovatebot/renovate). <!--renovate-debug:eyJjcmVhdGVkSW5WZXIiOiIzNy4xNjIuMSIsInVwZGF0ZWRJblZlciI6IjM3LjE2Mi4xIiwidGFyZ2V0QnJhbmNoIjoibWFpbiJ9--> Reviewed-on: #64 Co-authored-by: renovate-bot <renovate-bot@dubas.dev> Co-committed-by: renovate-bot <renovate-bot@dubas.dev>	2024-03-19 11:52:41 +00:00